A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps
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AbstractMotivation: The three-dimensional structure of genomes makes it possible for genomic regions not adjacent in the primary sequence to be spatially proximal. These DNA contacts have been found to be related to various molecular activities. Previous methods for analyzing DNA contact maps obtained from Hi-C experiments have largely focused on studying individual interactions, forming spatial clusters composed of contiguous blocks of genomic locations, or classifying these clusters into general categories based on some global properties of the contact maps.
All Author(s) ListHu XH, Shi CH, Yip KY
Name of Conference24th Annual Conference on Intelligent Systems for Molecular Biology (ISMB)
Start Date of Conference08/07/2016
End Date of Conference12/07/2016
Place of ConferenceOrlando
Journal nameBioinformatics
Year2016
Month6
Day15
Volume Number32
Issue Number12
PublisherOXFORD UNIV PRESS
Pages111 - 120
ISSN1367-4803
eISSN1460-2059
LanguagesEnglish-United Kingdom
Web of Science Subject CategoriesBiochemical Research Methods; Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Computer Science; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Mathematics; Statistics & Probability

Last updated on 2021-10-05 at 03:45