ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping
Publication in refereed journal


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其它資訊
摘要Sequencing reads generated by RNA-sequencing (RNA-seq) must first be mapped back to the genome through alignment before they can be further analyzed. Current fast and memory-saving short-read mappers could give us a quick view of the transcriptome. However, they are neither designed for reads that span across splice junctions nor for repetitive reads, which can be mapped to multiple locations in the genome (multi-reads). Here, we describe a new software package: ABMapper, which is specifically designed for exploring all putative locations of reads that are mapped to splice junctions or repetitive in nature.
著者Lou SK, Ni B, Lo LY, Tsui SKW, Chan TF, Leung KS
期刊名稱Bioinformatics
出版年份2011
月份2
日期1
卷號27
期次3
出版社OXFORD UNIV PRESS
頁次421 - 422
國際標準期刊號1367-4803
電子國際標準期刊號1460-2059
語言英式英語
Web of Science 學科類別Biochemical Research Methods; BIOCHEMICAL RESEARCH METHODS; Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; BIOTECHNOLOGY & APPLIED MICROBIOLOGY; Computer Science; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; MATHEMATICAL & COMPUTATIONAL BIOLOGY; Mathematics; Statistics & Probability

上次更新時間 2021-22-01 於 01:11