Genome-wide RNA-seq and ChIP-seq reveal Linc-YY1 function in regulating YY1/PRC2 activity during skeletal myogenesis
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AbstractLittle is known how lincRNAs are involved in skeletalmyogenesis. Here we describe the discovery and functional annotation of Linc-YY1, a novel lincRNA originating from the promoter of the transcription factor (TF) Yin Yang 1 (YY1). Starting from whole transcriptome shotgun sequencing (a.k.a. RNA-seq) data from muscle C2C12 cells, a series of bio-informatics analysis was applied towards the identification of hundreds of high-confidence novel lincRNAs. Genome wide approaches were then employed to demonstrate that Linc-YY1 functions to promote myogenesis through associating with YY1 and regulating YY1/PRC2 transcriptional activity in trans. Here we describe the details of the ChIP-seq, RNA-seq experiments, and data analysis procedures associated with the study published by Zhou and colleagues in the Nature Communications Journal in 2015 Zhou et al. (2015) [1]. The data was deposited on NCBI's Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) with accession number GSE74049.
All Author(s) ListSun K, Zhou L, Zhao Y, Wang HT, Suna H
Journal nameGenomics Data
Year2016
Month3
Volume Number7
PublisherELSEVIER SCIENCE BV
Pages247 - 249
ISSN2213-5960
LanguagesEnglish-United Kingdom
KeywordsC2C12 cells, ChIP-seq, Linc-YY1, Myogenesis, RNA-seq
Web of Science Subject CategoriesGenetics & Heredity

Last updated on 2021-23-02 at 11:11