Rapid DNA barcoding analysis of large datasets using the composition vector method
Publication in refereed journal

香港中文大學研究人員

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摘要Background: Sequence alignment is the rate-limiting step in constructing profile trees for DNA barcoding purposes. We recently demonstrated the feasibility of using unaligned rRNA sequences as barcodes based on a composition vector (CV) approach without sequence alignment (Bioinformatics 22: 1690). Here, we further explored the grouping effectiveness of the CV method in large DNA barcode datasets (COI, 18S and 16S rRNA) from a variety of organisms, including birds, fishes, nematodes and crustaceans.
著者Chu KH, Xu ML, Li CP
期刊名稱BMC Bioinformatics
出版年份2009
月份1
日期1
卷號10
出版社BIOMED CENTRAL LTD
國際標準期刊號1471-2105
語言英式英語
Web of Science 學科類別Biochemical Research Methods; BIOCHEMICAL RESEARCH METHODS; Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; BIOTECHNOLOGY & APPLIED MICROBIOLOGY; Mathematical & Computational Biology; MATHEMATICAL & COMPUTATIONAL BIOLOGY

上次更新時間 2020-31-05 於 01:56