Genotype-specific genomic markers associated with primary hepatomas, based on complete genomic sequencing of hepatitis B virus
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AbstractWe aimed to identify genomic markers in hepatitis B virus (HBV) that are associated with hepatocellular carcinoma (HCC) development by comparing the complete genomic sequences of HBVs among patients with HCC and those without. One hundred patients with HBV-related HCC and 100 age-matched HBV-infected non-HCC patients (controls) were studied. HBV DNA from serum was directly sequenced to study the whole viral genome. Data mining and rule learning were employed to develop diagnostic algorithms. An independent cohort of 132 cases (43 HCC and 89 non-HCC) was used to validate the accuracy of these algorithms. Among the 100 cases of HCC, 37 had genotype B (all subgenotype Ba) and 63 had genotype C (16 subgenotype Ce and 47 subgenotype Cs) HBV infection. In the control group, 51 had genotype B and 49 had genotype C (10 subgenotype Ce and 39 subgenotype Cs) HBV infection. Genomic algorithms associated with HCC were derived based on genotype/subgenotype-specific mutations. In genotype B HBV, mutations C1165T, A1762T and G1764A, T2712C/A/G, and A/T2525C were associated with HCC. HCC-related mutations T31C, T53C, and A1499G were associated with HBV subgenotype Ce, and mutations G1613A, G1899A, T2170C/G, and T2441C were associated with HBV subgenotype Cs. Amino acid changes caused by these mutations were found in the X, envelope, and precore/core regions in association with HBV genotype B, Ce, and Cs, respectively. In conclusion, infections with different genotypes of HBV (13, Ce, and Cs) carry different genomic markers for HCC at different parts of the HBV genome. Different HBV genotypes may have different virologic mechanisms of hepatocarcinogenesis.
All Author(s) ListSung JJY, Tsui SKW, Tse CH, Ng EYT, Leung KS, Lee KH, Mok TSK, Bartholomeusz A, Au TCC, Tsoi KKF, Locarnini S, Chan HLY
Journal nameJournal of Virology
Year2008
Month4
Day1
Volume Number82
Issue Number7
PublisherAmerican Society for Microbiology
Pages3604 - 3611
ISSN0022-538X
eISSN1098-5514
LanguagesEnglish-United Kingdom
Web of Science Subject CategoriesVirology; VIROLOGY

Last updated on 2021-11-04 at 23:51