ContigScape: a Cytoscape plugin facilitating microbial genome gap closing
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AbstractBackground: With the emergence of next-generation sequencing, the availability of prokaryotic genome sequences is expanding rapidly. A total of 5,276 genomes have been released since 2008, yet only 1,692 genomes were complete. The final phase of microbial genome sequencing, particularly gap closing, is frequently the rate-limiting step either because of complex genomic structures that cause sequence bias even with high genomic coverage, or the presence of repeat sequences that may cause gaps in assembly.
All Author(s) ListTang B, Wang Q, Yang MJ, Xie F, Zhu YQ, Zhuo Y, Wang SY, Gao H, Ding XM, Zhang LX, Zhao GP, Zheng HJ
Journal nameBMC Genomics
Detailed descriptionTo ORKTS: URL fm P139014 record.
Year2013
Month4
Day30
Volume Number14
PublisherBIOMED CENTRAL LTD
ISSN1471-2164
LanguagesEnglish-United Kingdom
KeywordsContigScape; Gap closing; Linkage; Microbial; Repeat contig; Visualization
Web of Science Subject CategoriesBiotechnology & Applied Microbiology; BIOTECHNOLOGY & APPLIED MICROBIOLOGY; Genetics & Heredity; GENETICS & HEREDITY

Last updated on 2020-27-10 at 00:31